For the moment
Floating and excluding windows
Keep one window out of the layout, or leave an app alone altogether.
Float one window
Press ⌃⌥⇧F to take the focused window out of the arrangement. Press it again to put it back.
Leave an app alone
In Settings > Arrange, the Apps section lets you leave an app alone, or give it a fixed position.
Leave an app out of the switcher
In Settings > Switcher, use "Leave out an app".
What Findow skips
Full-screen and fixed-size windows are never arranged.